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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11340703_11347552_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11340703 - 11347552
Intron Length:
6850

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAATGG
5'SS Class:
major
3'SS Sequence:
GATTCTCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
TTCTTTGGGATT
Flanking Amino Acid:
LQPDEIKLQEAMFELVTSEA
Intron Amino Acid Position:
314

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
65.8
40.9
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
72.1
0.5
0.9
62.6
39.3
Minor 5ss
36.7
-1.5
3.1
47.6
47.9
Minor BPS
44.8
-0.3
2.1
66.01
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013970
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014593
11328785 - 11376170
47386