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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11352348_11352468_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11352348 - 11352468
Intron Length:
121

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCGAG
5'SS Class:
strong_major
3'SS Sequence:
CCGTGTCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTCCAA
U12 Branch Point Sequence:
CCCGCCTGAGGC
Flanking Amino Acid:
ACALDQDDSGREPPAEESPA
Intron Amino Acid Position:
188

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
68.4
38.7
Major BPS
47.3
-0.1
1.3
56
39.4
Major PPT
67.8
0.4
0.9
60.5
35.4
Minor 5ss
30.2
-2.3
3.3
36.8
47.7
Minor BPS
40.5
-0.7
2
42.11
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013970
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014593
11328785 - 11376170
47386