Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11368453_11375997_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

11368453 - 11375997

Intron Length:

7545

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGTAAA

5'SS Class:

strong_major

3'SS Sequence:

TTTTTCTCTACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGTCAT

U12 Branch Point Sequence:

TTTTTCTCTACA

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

93.6

1.03

0.7

88.4

18.8

Major BPS

84.8

0.86

1.1

85.7

34.9

Major PPT

93.1

0.97

0.6

88.4

21.4

Minor 5ss

29.6

-2.3

2.6

32.7

42.2

Minor BPS

0.4

1.9

79.36

36.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000013970

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014593

11328785 - 11376170

47386