Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11386948_11388679_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

11386948 - 11388679

Intron Length:

1732

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACCAGAG

5'SS Class:

major

3'SS Sequence:

ACGGCCCTGGCAG|T

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

GTTTCAT

U12 Branch Point Sequence:

TCTCCCTTCACA

Flanking Amino Acid:

MYDPTTHHVQWSSMETIVSA

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

66.6

0.39

1.2

57.1

42.4

Major BPS

82.2

0.8

1.1

85.7

34.9

Major PPT

57.1

0.16

1.1

50.7

38.7

Minor 5ss

34.2

-1.8

3.6

46.7

48.6

Minor BPS

67.9

0.56

1.8

76.69

40.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000013917

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014494

11380908 - 11389618

8711