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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11394797_11399937_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11394797 - 11399937
Intron Length:
5141

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTACG
5'SS Class:
major
3'SS Sequence:
TGATCTGTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
TCTCCTCTGATC
Flanking Amino Acid:
SIASAYALCVLFRNCVYTYR
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.57
1.1
68.7
42
Major BPS
79
0.72
1
69
38.9
Major PPT
74.7
0.56
1
65.6
45.2
Minor 5ss
39
-1.2
2.7
53.9
42.7
Minor BPS
50.9
0.01
1.6
63.48
36.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023582
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021190
11394663 - 11445384
50722
ENSAPLT00000046453
11394663 - 11446031
51369
ENSAPLT00000039963
11394663 - 11445384
50722