Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11415492_11419504_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11415492 - 11419504

Intron Length:

4013

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGT|GTGAGCACG

5'SS Class:

major

3'SS Sequence:

TGTTTTGTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAGGAAA

U12 Branch Point Sequence:

CAGGCCATGACA

Flanking Amino Acid:

SVLLPRPVSCASEGVPVKYF

Intron Amino Acid Position:

102

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

62.9

0.31

1.1

55.3

43.6

Major BPS

-0.1

1.4

53.6

40.4

Major PPT

86.5

0.82

0.9

84.6

Minor 5ss

36.2

-1.6

2.9

44.3

Minor BPS

48.6

-0.1

1.8

55.91

43.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000023582

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046453

11394663 - 11446031

51369

ENSAPLT00000039963

11394663 - 11445384

50722