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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11429186_11429464_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11429186 - 11429464
Intron Length:
279

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAACATT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTCTGGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATGAA
U12 Branch Point Sequence:
TGCTTATGAAAA
Flanking Amino Acid:
RSLIPPVTFEVKADSLGIFS
Intron Amino Acid Position:
302

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
84.2
33.9
Major BPS
75.5
0.63
1
66
40.9
Major PPT
75.8
0.58
1
73.9
36.8
Minor 5ss
44.7
-0.6
3.1
66
45.2
Minor BPS
47.7
-0.1
1.8
59.4
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023582
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046453
11394663 - 11446031
51369
ENSAPLT00000039963
11394663 - 11445384
50722
ENSAPLT00000021190
11394663 - 11445384
50722