About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11430745_11431274_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11430745 - 11431274
Intron Length:
530

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATACA
5'SS Class:
strong_major
3'SS Sequence:
CCTCCTTGTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
ATCTAATTAATT
Flanking Amino Acid:
RKEYVFSDSKKREGFCQLLQ
Intron Amino Acid Position:
379

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
83.1
28.6
Major BPS
83
0.82
0.8
82
24.9
Major PPT
71.6
0.49
0.9
64.7
36.4
Minor 5ss
35.4
-1.7
2.7
43.5
43.6
Minor BPS
59.4
0.37
1.8
76.67
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023582
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021190
11394663 - 11445384
50722
ENSAPLT00000046453
11394663 - 11446031
51369
ENSAPLT00000039963
11394663 - 11445384
50722