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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11432397_11433195_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11432397 - 11433195
Intron Length:
799

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGGGGT
5'SS Class:
major
3'SS Sequence:
CCCATTCCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAA
U12 Branch Point Sequence:
CAACCTCTAACC
Flanking Amino Acid:
QEITSISFKVIAIHTLWNIR
Intron Amino Acid Position:
479

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
65.6
40
Major BPS
73.5
0.59
1
81.3
29.9
Major PPT
75.3
0.57
0.8
68.8
31.6
Minor 5ss
25.6
-2.8
3.5
34.5
43.8
Minor BPS
50.5
-0
1.7
58.82
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023582
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046453
11394663 - 11446031
51369
ENSAPLT00000039963
11394663 - 11445384
50722
ENSAPLT00000021190
11394663 - 11445384
50722