Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11433902_11435288_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11433902 - 11435288

Intron Length:

1387

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAAATTC

5'SS Class:

strong_major

3'SS Sequence:

CTTGTCTTGACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTAGTAT

U12 Branch Point Sequence:

CTTGTCTTGACA

Flanking Amino Acid:

HLTSGSEKKQRRNQNYTNIL

Intron Amino Acid Position:

550

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.4

0.79

0.9

78.4

30.1

Major BPS

59.8

0.24

1.5

60.1

46.3

Major PPT

0.59

Minor 5ss

41.9

-0.9

3.2

45.7

Minor BPS

67.4

0.54

1.4

73.38

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000023582

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046453

11394663 - 11446031

51369

ENSAPLT00000039963

11394663 - 11445384

50722

ENSAPLT00000021190

11394663 - 11445384

50722