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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11436185_11436339_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11436185 - 11436339
Intron Length:
155

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGATTA
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTGTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAA
U12 Branch Point Sequence:
CAAACTGTAACC
Flanking Amino Acid:
RKDHKVFLQFEEEEITFAPT
Intron Amino Acid Position:
633

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.84
0.9
79.6
29.4
Major BPS
76.9
0.67
0.8
77.7
26.1
Major PPT
78
0.63
0.8
76.4
32.2
Minor 5ss
41.7
-0.9
3.1
53.2
45
Minor BPS
48
-0.1
2
56.86
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023582
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039963
11394663 - 11445384
50722
ENSAPLT00000021190
11394663 - 11445384
50722
ENSAPLT00000046453
11394663 - 11446031
51369