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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11442713_11443297_F

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11442713 - 11443297
Intron Length:
585

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAATCTTG
5'SS Class:
major
3'SS Sequence:
TTTTTCTCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATCTTTCTAACA
Flanking Amino Acid:
PDNPAKEDMLRSCTPTDISN
Intron Amino Acid Position:
932

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.4
0.48
1.1
62.9
44.1
Major BPS
100
1.24
0.5
100
0
Major PPT
94.2
0.99
0.5
93.1
16
Minor 5ss
48
-0.2
2.8
65.5
45.7
Minor BPS
59.3
0.29
1.6
69.61
36.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023582
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021190
11394663 - 11445384
50722