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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11455517_11457734_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11455517 - 11457734
Intron Length:
2218

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTAAA
5'SS Class:
major
3'SS Sequence:
TCTCAAACTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAA
U12 Branch Point Sequence:
TCTCTCTCAAAC
Flanking Amino Acid:
KYDMQSRHEISPGHDGTWND
Intron Amino Acid Position:
70

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.69
1
77.8
31.4
Major BPS
73.4
0.58
0.9
75.3
29.7
Major PPT
71.2
0.48
0.9
63.5
36.7
Minor 5ss
41.2
-1
2.5
51
45.5
Minor BPS
54.4
0.12
1.7
65.16
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013322
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013933
11454900 - 11473791
18892