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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11457841_11458858_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11457841 - 11458858
Intron Length:
1018

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTAGAAAG
5'SS Class:
major
3'SS Sequence:
CTTCTCTCCATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
ATTTTTGTAATG
Flanking Amino Acid:
LTELHKKRGELAQSVIDLNN
Intron Amino Acid Position:
106

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1.1
72.8
38.2
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
77.2
0.61
0.7
72.6
25.7
Minor 5ss
29.2
-2.4
2.6
31.6
42.3
Minor BPS
53.7
-0
2
64.47
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013322
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013933
11454900 - 11473791
18892