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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11458933_11459130_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11458933 - 11459130
Intron Length:
198

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
TGTTGTCCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
TGTTTTGTACAT
Flanking Amino Acid:
KDKEMQMNEAKIAEYLQKIS
Intron Amino Acid Position:
130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
0.9
71.6
40.2
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
81.4
0.71
0.9
77.9
36.6
Minor 5ss
31.4
-2.1
2.7
33.7
35.3
Minor BPS
45.5
-0.2
2.2
68.86
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013322
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013933
11454900 - 11473791
18892