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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11460298_11462291_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11460298 - 11462291
Intron Length:
1994

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACC|GTAAGCAGT
5'SS Class:
major
3'SS Sequence:
TCTCTTACTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTTAC
U12 Branch Point Sequence:
TTTCTCTTACTT
Flanking Amino Acid:
EAAKEPLPVEPRDDDIEVLA
Intron Amino Acid Position:
236

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.5
0.34
1.4
64
47.6
Major BPS
69.2
0.48
1
61
37.1
Major PPT
83.9
0.76
0.7
81.7
28.6
Minor 5ss
43
-0.8
2.9
62.4
42.3
Minor BPS
67.8
0.64
1.6
84.73
36.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013322
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013933
11454900 - 11473791
18892