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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11462382_11463137_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11462382 - 11463137
Intron Length:
756

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTGCA
5'SS Class:
major
3'SS Sequence:
TCCCCTCCTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
AAGGTTTAAACC
Flanking Amino Acid:
SPVRAVSRASSKRLSQPAGG
Intron Amino Acid Position:
266

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1.2
68.9
35.7
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
79.7
0.67
0.7
76.7
25.3
Minor 5ss
35.4
-1.7
2.9
42.3
44.4
Minor BPS
47.3
-0.2
1.7
52.56
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013322
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013933
11454900 - 11473791
18892