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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11466954_11467072_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11466954 - 11467072
Intron Length:
119

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAACGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTGTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTTTGTTCATCT
Flanking Amino Acid:
RRVKLWEVLGDRCEPKGSLS
Intron Amino Acid Position:
355

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
78.6
35.9
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
84.5
0.78
0.8
80.7
31.3
Minor 5ss
41.6
-0.9
3.6
64.1
47.4
Minor BPS
51
0.11
2.2
79.81
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013322
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013933
11454900 - 11473791
18892