About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11468698_11470727_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11468698 - 11470727
Intron Length:
2030

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTCCC
5'SS Class:
major
3'SS Sequence:
CTCTTCTTCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTAAAT
U12 Branch Point Sequence:
TGCGCTTTTACT
Flanking Amino Acid:
IWTVDDNRLRHTLTGHSGKV
Intron Amino Acid Position:
403

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
65.8
40.2
Major BPS
67.2
0.43
1.2
73.3
39.1
Major PPT
84.9
0.79
0.7
83.7
24.5
Minor 5ss
29.6
-2.3
2.7
28.8
35.5
Minor BPS
56.7
0.29
1.8
72.3
44.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013322
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013933
11454900 - 11473791
18892