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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11470849_11471671_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11470849 - 11471671
Intron Length:
823

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGGATG
5'SS Class:
major
3'SS Sequence:
TTATCCTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATCAGAT
Flanking Amino Acid:
LKLWDLRSKVCIKTVFAGSS
Intron Amino Acid Position:
443

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.4
0.5
1.1
68.2
42.4
Major BPS
100
1.24
0.5
100
0
Major PPT
83
0.74
0.7
81.7
30
Minor 5ss
38.4
-1.3
3.3
54.7
43.7
Minor BPS
49.9
0.07
2.1
79.47
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013322
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013933
11454900 - 11473791
18892