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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11472832_11473184_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11472832 - 11473184
Intron Length:
353

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTCA
5'SS Class:
strong_major
3'SS Sequence:
TCTGACCTCGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
CTCCTCTGACCT
Flanking Amino Acid:
CGSDWTRVVFSPDGNYVAAG
Intron Amino Acid Position:
544

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.4
31.8
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
68.4
0.42
0.9
62.2
34.3
Minor 5ss
37
-1.5
3.2
47.9
47.8
Minor BPS
48.4
-0
1.8
65.4
45.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013322
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013933
11454900 - 11473791
18892