About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11480618_11480708_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11480618 - 11480708
Intron Length:
91

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTCCA
5'SS Class:
strong_major
3'SS Sequence:
CCCTTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGGTAAT
U12 Branch Point Sequence:
CCTCTGGTAATC
Flanking Amino Acid:
VDNMGTVEPVDGVVLIDPTM
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.4
1.05
0.8
80.7
33.8
Major BPS
69.2
0.48
1.3
69.7
44.2
Major PPT
85.7
0.8
0.7
83.6
24.7
Minor 5ss
34.5
-1.8
2.8
42.4
44.3
Minor BPS
40.6
-0.7
2.4
50.09
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012828
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041666
11479921 - 11481580
1660
ENSAPLT00000013395
11479921 - 11488542
8622