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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11483962_11484317_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11483962 - 11484317
Intron Length:
356

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGAGT
5'SS Class:
strong_major
3'SS Sequence:
GAATTCCCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAG
U12 Branch Point Sequence:
GAGCACTGAATT
Flanking Amino Acid:
LHLKACLSKEVYYHGEPIPV
Intron Amino Acid Position:
215

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.8
78.6
37.3
Major BPS
67.4
0.43
1.5
65.3
43.7
Major PPT
61.5
0.26
0.9
52
38.7
Minor 5ss
28.5
-2.5
3.1
39.7
45.9
Minor BPS
48.7
-0
1.6
61.97
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012828
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013395
11479921 - 11488542
8622