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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11484403_11485644_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11484403 - 11485644
Intron Length:
1242

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTCCCCAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
GCACAACTAATT
Flanking Amino Acid:
EKTVKKIKVTVEQVANVVLY
Intron Amino Acid Position:
243

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
87.9
29.3
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
65.6
0.35
1
63.7
31.7
Minor 5ss
45.7
-0.5
2.8
59
45.5
Minor BPS
41.5
-0.5
1.9
54.6
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012828
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013395
11479921 - 11488542
8622