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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11485718_11486678_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11485718 - 11486678
Intron Length:
961

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTGAA
5'SS Class:
major
3'SS Sequence:
TCTTTATTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
CTCTCTTTATTT
Flanking Amino Acid:
YTKVVASEEAQEKVQPNSSL
Intron Amino Acid Position:
267

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1
67.8
32.7
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
90.5
0.91
0.7
88.8
26.9
Minor 5ss
28.7
-2.4
3.1
36.5
41.7
Minor BPS
62.4
0.47
1.6
74.81
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012828
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013395
11479921 - 11488542
8622