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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11486817_11487113_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11486817 - 11487113
Intron Length:
297

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGTGGT
5'SS Class:
major
3'SS Sequence:
TTTTCTCTGGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTAACAC
U12 Branch Point Sequence:
TACTGCCTAACA
Flanking Amino Acid:
DEDTNLASSTIIKDGIDKTV
Intron Amino Acid Position:
313

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.69
1
74.3
36.2
Major BPS
49.5
-0
1.1
58.7
36.3
Major PPT
79.2
0.66
0.9
77.7
31
Minor 5ss
31.4
-2.1
3.3
44.7
43.5
Minor BPS
54
0.12
2.1
69.25
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012828
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013395
11479921 - 11488542
8622