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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11487192_11488298_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11487192 - 11488298
Intron Length:
1107

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGAGTA
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCCCCAAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTGAC
U12 Branch Point Sequence:
TTCTCCCCAAAG
Flanking Amino Acid:
YKVRVKLTVSGEVGTELPFR
Intron Amino Acid Position:
339

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
1
75.2
35.1
Major BPS
72.6
0.56
0.9
63.1
35.8
Major PPT
67.1
0.39
1
67.3
26.7
Minor 5ss
33.6
-1.9
3.5
39
46.2
Minor BPS
49
-0.2
2.1
62
45.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012828
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013395
11479921 - 11488542
8622