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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_1152907_1155255_F

Intron Information:

Intron Rank:
150617
Intron Class:
major
Intron Phase:
Intron Coordinates:
1152907 - 1155255
Intron Length:
2349

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTATGGCTC
5'SS Class:
major
3'SS Sequence:
TTATTTCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTATTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.1
60.4
44.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
90.5
0.91
0.7
89.1
27.5
Minor 5ss
41
-1
3.3
50.7
46
Minor BPS
64.4
0.53
1.7
84.57
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030925
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046663
1152055 - 1172510
20456
ENSAPLT00000043331
1152055 - 1156143
4089