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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11541824_11542323_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11541824 - 11542323
Intron Length:
500

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TTCCTCAACATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAA
U12 Branch Point Sequence:
CTTTCCTCAACA
Flanking Amino Acid:
PTALNSIDSDGFWKATCPPS
Intron Amino Acid Position:
175

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
87
27.7
Major BPS
73.1
0.58
1
73.8
32.3
Major PPT
66.9
0.38
0.9
62.4
32.2
Minor 5ss
40.4
-1.1
2.8
51.7
39.2
Minor BPS
76.9
0.84
1.5
83.78
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012041
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012608
11527150 - 11563542
36393