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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11542487_11544571_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11542487 - 11544571
Intron Length:
2085

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGCAAC
5'SS Class:
strong_major
3'SS Sequence:
CCTTTCTCTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
TCTCCTTTGATT
Flanking Amino Acid:
FDLMNGGPHLGLRLFQKFDT
Intron Amino Acid Position:
229

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
72.3
39.5
Major BPS
84
0.85
0.9
75
39.9
Major PPT
81.6
0.71
0.7
77.1
24.9
Minor 5ss
39.2
-1.2
2.8
43.8
43.8
Minor BPS
69.8
0.7
1.2
80.03
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012041
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012608
11527150 - 11563542
36393