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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_1154455_1157931_R

Intron Information:

Intron Rank:
145655
Intron Class:
major
Intron Phase:
Intron Coordinates:
1154455 - 1157931
Intron Length:
3477

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTGCA
5'SS Class:
strong_major
3'SS Sequence:
TAATTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
AATCACTGAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1.1
75
35.3
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
86.7
0.83
0.8
85
35
Minor 5ss
38.5
-1.3
3.1
50.7
45.7
Minor BPS
49.9
0.07
1.7
69.44
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025745
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036151
1153235 - 1158137
4903