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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11545589_11546282_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11545589 - 11546282
Intron Length:
694

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTTCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTATGAT
U12 Branch Point Sequence:
TCCTTTTCAACA
Flanking Amino Acid:
LERASTKMLDRWSIMVYETK
Intron Amino Acid Position:
312

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
83.1
30.9
Major BPS
72.3
0.55
1.1
63.4
42.8
Major PPT
79.8
0.67
0.8
76.7
30.6
Minor 5ss
30.6
-2.2
3
41.1
45.5
Minor BPS
59.7
0.3
1.5
66.33
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012041
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012608
11527150 - 11563542
36393