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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11547040_11547135_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11547040 - 11547135
Intron Length:
96

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTACT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTTGTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTAC
U12 Branch Point Sequence:
TTTTCCTTACCT
Flanking Amino Acid:
DQHSVVISSAKVLCETVKDF
Intron Amino Acid Position:
372

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
83.3
27.9
Major BPS
68.9
0.47
1
59.6
38.6
Major PPT
78.6
0.64
0.9
72.8
37.5
Minor 5ss
34.6
-1.7
2.8
44.2
37
Minor BPS
85.2
1.18
1.4
100
28.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012041
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012608
11527150 - 11563542
36393