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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11547236_11547387_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11547236 - 11547387
Intron Length:
152

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATTG
5'SS Class:
strong_major
3'SS Sequence:
CTTTGCCTTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGTTTAC
U12 Branch Point Sequence:
CTGGCTAAAACT
Flanking Amino Acid:
SEESEVMARKCSVLKEKLDS
Intron Amino Acid Position:
406

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
74.9
36.1
Major BPS
62.6
0.31
1.1
55.1
41.7
Major PPT
79.4
0.66
0.8
73.7
31.3
Minor 5ss
40.9
-1
3.2
55.7
48.5
Minor BPS
46
-0.2
2
63.78
46.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012041
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012608
11527150 - 11563542
36393