About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11547662_11549514_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11547662 - 11549514
Intron Length:
1853

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACATGT
5'SS Class:
major
3'SS Sequence:
TCTCTCTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATCAC
U12 Branch Point Sequence:
TCTCTCTTTACA
Flanking Amino Acid:
IRQIIEHAEKAVDEQNAQTQ
Intron Amino Acid Position:
497

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.1
72.5
39.9
Major BPS
70.5
0.51
1
72
33.1
Major PPT
88.7
0.87
0.7
83.3
25.1
Minor 5ss
45.2
-0.5
3
65.7
45.3
Minor BPS
63.3
0.41
1.6
72.36
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012041
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012608
11527150 - 11563542
36393