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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11551064_11551950_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11551064 - 11551950
Intron Length:
887

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
AATTTTCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
CCATTGTCAATT
Flanking Amino Acid:
PMLNTKILYPNIRAGMSGSL
Intron Amino Acid Position:
594

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
80.4
26.8
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
81
0.7
0.8
74.7
35.2
Minor 5ss
32.5
-2
3.3
40.3
40.1
Minor BPS
45.2
-0.2
2.2
59.82
44.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012041
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012608
11527150 - 11563542
36393