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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11552048_11552904_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11552048 - 11552904
Intron Length:
857

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTGAGTATG
5'SS Class:
major
3'SS Sequence:
TTTTGTTTGACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTGTTTGACA
Flanking Amino Acid:
ADPFNSEPENLECYTEKCVM
Intron Amino Acid Position:
626

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.1
71.2
40.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
82.7
0.74
1
79.9
37.7
Minor 5ss
36.8
-1.5
2.9
52.3
44.3
Minor BPS
69.2
0.6
1.7
81.99
33.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012041
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012608
11527150 - 11563542
36393