Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11553920_11554717_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11553920 - 11554717

Intron Length:

798

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGGAAC

5'SS Class:

strong_major

3'SS Sequence:

TTTTTCTGTACAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAGTAAT

U12 Branch Point Sequence:

TTTTTCTGTACA

Flanking Amino Acid:

KNLEQKVLLECDGRPIPLPS

Intron Amino Acid Position:

696

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.8

0.87

0.8

78.2

31.2

Major BPS

76.6

0.66

1.1

75.9

36.3

Major PPT

87.9

0.85

0.8

Minor 5ss

27.1

-2.6

42.4

Minor BPS

64.2

0.44

1.8

79.82

35.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000012041

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012608

11527150 - 11563542

36393