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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11559996_11560392_F

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11559996 - 11560392
Intron Length:
397

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAAGC
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTGATCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TGGCTTTTAACT
Flanking Amino Acid:
ELLLAGKMALQLDPPQKEQL
Intron Amino Acid Position:
934

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
71.6
38.4
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
74.5
0.55
1
66.1
44.4
Minor 5ss
34
-1.8
2.9
40.9
39.4
Minor BPS
68.7
0.66
1.2
77.57
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012041
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012608
11527150 - 11563542
36393