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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11562308_11563452_F

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11562308 - 11563452
Intron Length:
1145

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTTTCA
5'SS Class:
major
3'SS Sequence:
TTTATTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTCTCTTTATTT
Flanking Amino Acid:
LLHLERRDLKDLGVTKVGHM
Intron Amino Acid Position:
1057

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1.1
70.7
35.9
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
91.7
0.94
0.7
84.7
35.8
Minor 5ss
39.5
-1.2
2.9
51.3
45.1
Minor BPS
69.4
0.69
1.5
83.14
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012041
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012608
11527150 - 11563542
36393