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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11573090_11573459_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11573090 - 11573459
Intron Length:
370

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
TGTGCTTTCACA
Flanking Amino Acid:
ACSSQVRSTSIFYSYKDANQ
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
90.7
21.1
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
91.8
0.94
0.7
84.6
36
Minor 5ss
47.8
-0.2
2.8
67.5
37.3
Minor BPS
59.1
0.28
1.9
71.5
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012038
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012519
11573023 - 11582463
9441