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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11573621_11574355_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11573621 - 11574355
Intron Length:
735

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTTGC
5'SS Class:
major
3'SS Sequence:
TGTTTCTCTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
CTAGCTTTAATA
Flanking Amino Acid:
SEIFETREATLNFWSKYVDG
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
67.3
39.4
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
86.5
0.82
0.7
80.7
31.4
Minor 5ss
42.7
-0.8
2.8
58.3
40.4
Minor BPS
64.7
0.46
1.4
67.35
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012038
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012519
11573023 - 11582463
9441