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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11574381_11574920_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11574381 - 11574920
Intron Length:
540

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
GCGTCTGTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGTCCAA
U12 Branch Point Sequence:
AAGGGCTGAGTT
Flanking Amino Acid:
ATLNFWSKYVDGDQCEPQPC
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.9
1.13
0.6
92.3
16.1
Major BPS
44.1
-0.3
1.4
50.2
45.2
Major PPT
72.6
0.51
1
68.7
42
Minor 5ss
35
-1.7
2.7
41.8
44.8
Minor BPS
40.7
-0.6
2
52.15
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012038
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012519
11573023 - 11582463
9441