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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11589228_11590378_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11589228 - 11590378
Intron Length:
1151

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTACA
5'SS Class:
strong_major
3'SS Sequence:
GTCTCCTTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTAAC
U12 Branch Point Sequence:
GTCTCCTTCACA
Flanking Amino Acid:
PKFGGDNCEEEKFECWYKNG
Intron Amino Acid Position:
129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.8
1.01
0.7
85.8
24.1
Major BPS
64.5
0.36
1
65.2
28.2
Major PPT
77.9
0.63
0.8
71.7
32.8
Minor 5ss
30.6
-2.2
2.5
34.4
41.2
Minor BPS
69
0.59
1.8
75.93
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011737
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012263
11585081 - 11594509
9429