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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11593435_11593931_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11593435 - 11593931
Intron Length:
497

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TCCATGACCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
CTTTCCATGACC
Flanking Amino Acid:
DLVRPHHVTVGDFDKYRREL
Intron Amino Acid Position:
433

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.91
0.9
84.4
33.5
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
65
0.34
0.9
57.4
37.3
Minor 5ss
37.9
-1.4
2.7
44.7
42.7
Minor BPS
69.4
0.59
1.6
79.02
36.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011737
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012263
11585081 - 11594509
9429