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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11597899_11600310_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11597899 - 11600310
Intron Length:
2412

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTTTTAAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TTTTTTTTCAGT
Flanking Amino Acid:
KWNVEMESSRFQGTSKKGVS
Intron Amino Acid Position:
634

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
78.8
35.5
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
82
0.72
1
87
30.8
Minor 5ss
34.9
-1.7
3.2
42.4
44.3
Minor BPS
58.4
0.34
2
82.56
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011485
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011980
11597737 - 11614320
16584