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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11601785_11602752_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11601785 - 11602752
Intron Length:
968

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTTGAAAC
5'SS Class:
major
3'SS Sequence:
AACTTCCTTATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACATCAT
U12 Branch Point Sequence:
TTTTCCCAAACT
Flanking Amino Acid:
REELLKILQELPSVSQETLK
Intron Amino Acid Position:
501

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.2
68.9
35.6
Major BPS
66.8
0.42
1.1
68
37.7
Major PPT
72.8
0.51
0.8
66
35
Minor 5ss
36.2
-1.6
2.7
43.5
43.8
Minor BPS
69
0.68
2
92.91
35.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011485
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011980
11597737 - 11614320
16584