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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11602883_11603166_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11602883 - 11603166
Intron Length:
284

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
TTAAACTTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATACAT
U12 Branch Point Sequence:
TATACATTAAAC
Flanking Amino Acid:
LLPTVVMHLKKQDLKETFID
Intron Amino Acid Position:
457

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.74
0.9
76.8
33.7
Major BPS
74.9
0.62
1
81.3
29.9
Major PPT
71.8
0.49
0.9
62.8
43.5
Minor 5ss
32.2
-2
3
41.4
39.1
Minor BPS
60.4
0.3
1.7
71.67
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011485
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011980
11597737 - 11614320
16584