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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11604878_11605634_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11604878 - 11605634
Intron Length:
757

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTGGA
5'SS Class:
major
3'SS Sequence:
TCTTGCGTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
CTCTTCTGAACA
Flanking Amino Acid:
DSDDNIKRGKHMDFMSDFDM
Intron Amino Acid Position:
379

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1
66.5
39.5
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
80.2
0.68
0.9
76.7
37.4
Minor 5ss
34.2
-1.8
3.2
45.7
43.5
Minor BPS
66
0.5
1.5
71.44
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011485
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011980
11597737 - 11614320
16584