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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_1161156_1171774_F

Intron Information:

Intron Rank:
150620
Intron Class:
major
Intron Phase:
Intron Coordinates:
1161156 - 1171774
Intron Length:
10619

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACATGTT
5'SS Class:
major
3'SS Sequence:
TTTACTCTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTTTCTATAGTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
78.8
35.5
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
81.7
0.71
0.8
74.1
36.5
Minor 5ss
36.9
-1.5
3.7
57.9
46.7
Minor BPS
61.9
0.45
1.8
84.75
36.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030925
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046663
1152055 - 1172510
20456